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Name

PFAMB

 Search
Status The current release has 127296 entries and was indexed 06-Mar-2006.
Description Pfam is a database of multiple alignments of protein domains or conserved protein regions. Hopefully they represent some evolutionary conserved structure which has implications for the protein's function.

Pfam is actually formed in two separate ways. Pfam-A are accurate human crafted multiple alignments. To give Pfam a more comprehensive coverage of known proteins we automatically generate a supplement called Pfam-B This contains a large number of small families taken from the PRODOM database that do not overlap with Pfam-A. Although of lower quality Pfam-B families can be useful when no Pfam-A families are found.

WWW http://www.sanger.ac.uk/Software/Pfam/
Ftp ftp://ftp.sanger.ac.uk/pub/databases/Pfam/
Data-fields in SRS
Field Name
Short Name
Type
No. of Keys
No. of Entry References
Indexing Date
Status
ID id id 127296 127296 06-Mar-2006 ok
AllText all group 0 0   not indexed
Accession Number acc index 127296 127296 06-Mar-2006 ok
NAlign nal num 218 127296 06-Mar-2006 ok
GenType gtp index 1 127296 06-Mar-2006 ok
Alignment ali show 0 0   not indexed
Text txt index 36 3491774 06-Mar-2006 ok
Link lnk show 0 0   not indexed
Loaders
PfambId
Links
From Databank
Entries Linked
To Databank
Entries Linked
Links Total
Indexing Date
PFAMB 0 SWISSPROTRELEASE 0 0  
PFAMB 0 UNIPROT_SWISSPROT 0 0  
PFAMB 0 SPTREMBL 0 0  
PFAMB 0 UNIPROT_TREMBL 0 0  
SRS Description Structure ( srsgen.i , srsdb.i , href.i )
Syntax
Information
SRS Release 7.1.3.1    Copyright © 1997-2003 LION bioscience AG. All Rights Reserved. Terms of Use Feedback