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Name

PFAMHMM

 Search
Status The current release has 16366 entries and was indexed 06-Mar-2006.
Description PfamHmm is a database of the Hidden Markov Models (HMMs) derived from the seed alignment in Pfam which can be used to find new members of the domain and also take a set of sequences to realign them to the model.

Pfam is a database of multiple alignments of protein domains or conserved protein regions. Hopefully they represent some evolutionary conserved structure which has implications for the protein's function.
Literature Proteins: Structure, Function and Genetics 28:405-420 (1997).
WWW http://www.sanger.ac.uk/Software/Pfam/
Ftp ftp://ftp.sanger.ac.uk/pub/databases/Pfam/
Data-fields in SRS
Field Name
Short Name
Type
No. of Keys
No. of Entry References
Indexing Date
Status
AllText all group 0 0   not indexed
ID id id 16366 16366 06-Mar-2006 ok
Type typ index 2 16366 06-Mar-2006 ok
AllText all group 0 0   not indexed
Accesssion Number acc index 8183 16366 06-Mar-2006 ok
Description des index 8853 63642 06-Mar-2006 ok
Length len num 796 16366 06-Mar-2006 ok
Alphabet alf index 1 16366 06-Mar-2006 ok
CS cs index 1 16366 06-Mar-2006 ok
RF rf index 2 16366 06-Mar-2006 ok
MapLocation mlc index 1 16366 06-Mar-2006 ok
Sequences nsq num 280 16366 06-Mar-2006 ok
Command com index 12 139851 06-Mar-2006 ok
Date dat date 12 16366 06-Mar-2006 ok
EVDmu emu real 16339 16366 06-Mar-2006 ok
EVDlambda ela real 15940 16366 06-Mar-2006 ok
XT xt show 0 0   not indexed
NulT nut show 0 0   not indexed
NulE nue show 0 0   not indexed
Loaders
Links
From Databank
Entries Linked
To Databank
Entries Linked
Links Total
Indexing Date
PFAMHMM 0 PFAMA 0 0  
SRS Description Structure ( srsgen.i , srsdb.i , href.i )
Syntax
Information
SRS Release 7.1.3.1    Copyright © 1997-2003 LION bioscience AG. All Rights Reserved. Terms of Use Feedback