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Name

DOMO

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Status The current release has 8877 entries and was indexed 07-Mar-2006.
Description DOMO is a database of homologous protein domain families. It was obtained from successive sequence analysis steps including similarity search, domain delineation, multiple sequence alignment and motif construction. 83054 non redundant protein sequences from SWISSPROT and PIR have been analysed yielding a database of 99058 domains clustered into 8877 multiple sequence alignments.

DISCLAIMER: DOMO is obtained from a fully automated analysis process and should be considered with care. [more information on limitations]
Literature Jérôme Gracy, Patrick Argos "Automated protein database classification: I. Integration of compositional similarity search, local similarity search and multiple sequence alignment. II. Delineation of domain boundaries from sequence similaritites.", (1998) Bioinformatics, 14(2), 164-187.
Data-fields in SRS
Field Name
Short Name
Type
No. of Keys
No. of Entry References
Indexing Date
Status
AllText all group 0 0   not indexed
ID id id 8877 8877 07-Mar-2006 ok
Description des index 2250 12358 07-Mar-2006 ok
Keywords key index 6650 23902 07-Mar-2006 ok
Sequence sq index 89847 160224 07-Mar-2006 ok
Loaders
Links
From Databank
Entries Linked
To Databank
Entries Linked
Links Total
Indexing Date
DOMO 0 SWISSPROTRELEASE 0 0  
SRS Description Structure ( srsgen.i , srsdb.i , href.i )
Syntax
Information
SRS Release 7.1.3.1    Copyright © 1997-2003 LION bioscience AG. All Rights Reserved. Terms of Use Feedback